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European Biopharmaceutical Review

Proteomics Potential

Proteomics activity in the biotech and pharmaceutical industries has shifted in recent years from technology-focused and centralised discovery programmes, to enabling facilities integrated into discovery and production departments, using highly specialised state-of-the-art proteomics techniques.

These are utilised for biomarker and target discovery and the development of protein therapeutics. Applications for proteomics techniques include antigen discovery, proteinprotein interaction studies, differential protein display between treated and non treated proteomes from preclinical studies (for example cell culture model), but also in upstream and downstream process optimisation.

Also, state-of-the-art protein analytics developed for proteomics applications are applied for full characterisation of protein therapeutics in its structural characterisation, physiochemical properties and its process- and product-related impurities analysis following ICH Q6B.

State-of-the-art techniques for the analysis of complex proteomes and protein mixtures use multidimensional approaches: separation at a protein level (1D/2D PAGE); different separation principles at a peptide level (IEF, 1D LC and 2D LC workflows); and a combination of different mass spectrometry-based techniques (electrospray ionisation and MALDI-laser based ionisation, iontrap or time-of-flight analysers to generate MS and MS-MS data).


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Dr Herbert Thiele was educated at the Institute of Organic Chemistry, TH Aachen, where he gained his diploma and wrote his doctoral thesis. He started out in 1977 as a teacher of Chemistry and Mathematics at the Fachschule des Heeres für Technik/ Aachen. He joined Bruker in 1978 and has held various management positions, as well as being made an Honorary Professor in Analytical Chemistry at the University of Bremen. In 2002 he was appointed Director of Bioinformatics.

Martin Blüggel earned a diploma in Chemistry at the University of Konstanz, specialising in proteins. After working as a researcher, he founded, along with Prof H E Meyer, Protagen GbR, a company devoted to peptide and protein analysis. In 1999, this venture became Protagen AG, and Martin was appointed Chief Operating Officer in 2002. He is responsible for management of customer projects, and coordinating Protagen´s resources across the various operating entities.

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Dr Herbert Thiele
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Martin Blüggel
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